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SRX26967808: GSM8663921: VAT from late active rats (Control) rep3; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 20.7M spots, 1G bases, 539.2Mb downloads

External Id: GSM8663921_r1
Submitted by: Computational Biology and Health Genomics, Centre for Genomic Regulation
Study: Timing of exercise differentially impacts adipose tissue gain in male adolescent rats
show Abstracthide Abstract
Circadian rhythms of metabolic, hormonal, and behavioral fluctuations and their alterations can impact health. An important gap in knowledge in the field is whether the time of the day of exercise and the age of onset of exercise exert distinct effects at the level of whole-body adipose tissue and body composition. The goal of the present study was to determine how exercise at different times of the day during adolescence impacts the adipose tissue transcriptome and content in a rodent model. Rats were subjected to one of four conditions during their adolescence: early active phase control or exercise (EAC or EAE; ZT13), and late active phase control or exercise (LAC or LAE; ZT23). The effects of exercise timing were assessed at the level of subcutaneous and visceral adipose tissue transcriptome, body composition, hypothalamic expression of orexigenic and anorexigenic genes, blood serum markers and 24-hour core body temperature patterns. We found that late active phase exercise (ZT23) greatly upregulated pathways of lipid synthesis, glycolysis and NADH shuttles in LAE rats, compared to LAC or EAE. Conversely, LAE rats showed notably lower content of adipose tissue. In addition, LAE rats showed notably increased serum FGF21 levels and other serum markers of glucose metabolism impairment compared to other groups. Finally, LAE rats showed higher post-exercise core body temperature compared to other groups. Our results thus indicate that our exercise protocol induced an unusual effect characterized by enhanced lipid synthesis but reduced adipose tissue content in late active-phase but not early active phase exercise during adolescence. Overall design: RNA seq from subcutaneous or visceral adipose tissue (condition 1) from sedentary or exercised rats (condition 2) at zeitgeber time 13 or 23 (condition 3)
Sample: VAT from late active rats (Control) rep3
SAMN45165999 • SRS23436677 • All experiments • All runs
Library:
Name: GSM8663921
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Approximately 80mg of adipose tissue was collected and stored in 2ml Precellys tubes (Bertin Instruments, CK28 - 2mL for adipose tissue), filled with the reagents according to the NZY Total RNA isolation kit protocol (NZY, MB1340). The tubes were immediately frozen by contact with dry ice and stored in a -80Cº freezer until further processing. Prior to further processing, the samples were homogenized (Precellys Evolution Homogenizer, Bertin Instruments, France) for 20 seconds at 4500RPM. After RNA isolation, samples were analyzed to determine the RIN score for RNA integrity (Agilent Technologies, 2100 Bioanalyzer). Only samples with a RIN score over 9 were used in all experiments. mRNA sequencing: Purified RNA from VAT and SAT samples collected from EAC (n=6), EAE (n=6), LAC (n=6) and LAE (n=6) rats on P61, 24 hours after the last exercise session, were used to prepare polyA-selected Illumina short-read libraries following standard protocols at the Genomics Unit of the Centre for Genomic Regulation. Samples were sequenced on a HiSeq2500 and an average of 21 million 50-nt single-end reads were produced.
Runs: 1 run, 20.7M spots, 1G bases, 539.2Mb
Run# of Spots# of BasesSizePublished
SRR3160300720,706,8061G539.2Mb2025-01-11

ID:
36423490

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